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IsoSpec
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IsoSpec
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This is the complete list of members for IsoSpec::FixedEnvelope, including all inherited members.
| _confs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| _confs_no (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| _masses (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| _probs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| AbyssalWassersteinDistanceGrad (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | friend |
| addConfILG(const GenType &generator) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| allDim (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| allDimSizeofInt (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| bin(double bin_width=1.0, double middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static |
| Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| conf(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| confs() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| confs_no() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| current_size (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| empiric_average_mass() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| empiric_stddev() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| empiric_variance() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| FixedEnvelope() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| FixedEnvelope(const FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| FixedEnvelope(FixedEnvelope &&other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinestatic |
| get_total_prob() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| getAllDim() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static |
| LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static |
| mass(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| masses() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| normalize() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| operator*(const FixedEnvelope &other) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| operator+(const FixedEnvelope &other) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| OrientedWassersteinDistance(FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| prob(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| probs() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| reallocate_memory(size_t new_size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| release_confs() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| release_everything() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| release_masses() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| release_probs() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline |
| resample(size_t ionic_current, double beta_bias=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| scale(double factor) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| shift_mass(double shift) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| slow_reallocate_memory(size_t new_size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| sort_by_mass() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| sort_by_prob() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| sorted_by_mass (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| sorted_by_prob (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| store_conf(const T &generator) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlineprotected |
| store_conf(double _mass, double _prob) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlineprotected |
| swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlineprotected |
| tconfs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| threshold_init(Iso &&iso, double threshold, bool absolute) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| tmasses (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| total_prob (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| total_prob_init(Iso &&iso, double target_prob, bool trim) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| tprobs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected |
| WassersteinDistance(FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | |
| ~FixedEnvelope() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inlinevirtual |
1.15.0